DNA Binding Site
| Accessions: | ATCACGTG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATCACGTG |
| Type: | Heterodimer |
| Binding TFs: | UP00324A (Helix-loop-helix DNA-binding domain) UP00356A (Helix-loop-helix DNA-binding domain) UP00309A / UP00397A (Helix-loop-helix DNA-binding domain) UP00332A (Helix-loop-helix DNA-binding domain) UP00365A (Helix-loop-helix DNA-binding domain) UP00367A (Helix-loop-helix DNA-binding domain) UP00373A (Helix-loop-helix DNA-binding domain) UP00379A (Helix-loop-helix DNA-binding domain) UP00382A (Helix-loop-helix DNA-binding domain) UP00050A (Helix-loop-helix DNA-binding domain) UP00060A (Helix-loop-helix DNA-binding domain) UP00548B (Helix-loop-helix DNA-binding domain) |
| Binding Motifs: | UP00356A_1 rkmkkakCACGTGmyyrvwc UP00050A_1 rrawkrgTCACGTGAsymrywy UP00060A_1 kgmsCACGTGgkcrkk UP00309A_1 kaycwgkCACGTGactbvymg UP00324A_1 gwkgmrTCACGTGAygmmbw UP00332A_1 gwcymasCACGTGsycskhw UP00365A_1 wswaTCACGTGAywawy UP00367A_1 yrdamCACGTGktymr UP00373A_1 awwAarAAACAwws UP00379A_1 ybtrvarwaaarwg UP00382A_1 Awkwwtwaaaawwa UP00397A_1 wswaywsrTCACGTGmtcdgmy UP00050A_2 ygysryTmCACGTGGArrsmrgt UP00060A_2 ktGyCAyGcGaCdk UP00373A_2 / UP00382A_2 twdasCACGTGskawb UP00548B_1 sGgamrGrCACGTGtCsyhCysy |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.