DNA Binding Site
| Accessions: | GCACGTGA (UniPROBE 20160601), MA0964.3.15 (JASPAR 2024), MA0964.3.2 (JASPAR 2024), MA0964.3.3 (JASPAR 2024), MA2175.1.6 (JASPAR 2024), MA2176.1.15 (JASPAR 2024), MA2301.1.11 (JASPAR 2024), MA2304.1.1 (JASPAR 2024), MA2304.1.12 (JASPAR 2024), MA2304.1.15 (JASPAR 2024), MA2304.1.8 (JASPAR 2024) |
| Organisms: | Saccharomyces cerevisiae, Caenorhabditis elegans, Arabidopsis thaliana, Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GCACGTGA |
| Type: | Heterodimer |
| Binding TFs: | UP00324A (Helix-loop-helix DNA-binding domain) UP00356A (Helix-loop-helix DNA-binding domain) UP00397A (Helix-loop-helix DNA-binding domain) UP00365A (Helix-loop-helix DNA-binding domain) UP00373A (Helix-loop-helix DNA-binding domain) UP00379A (Helix-loop-helix DNA-binding domain) UP00382A (Helix-loop-helix DNA-binding domain) Q18711 (Helix-loop-helix DNA-binding domain) UP00548B (Helix-loop-helix DNA-binding domain) Q9LEZ3 (Helix-loop-helix DNA-binding domain) G5EEH5 O61735 Q18711 Q9LEZ3 Q9VGZ5 |
| Binding Motifs: | UP00356A_1 rkmkkakCACGTGmyyrvwc UP00324A_1 gwkgmrTCACGTGAygmmbw UP00365A_1 wswaTCACGTGAywawy UP00373A_1 awwAarAAACAwws UP00379A_1 ybtrvarwaaarwg UP00382A_1 Awkwwtwaaaawwa UP00397A_1 wswaywsrTCACGTGmtcdgmy UP00373A_2 / UP00382A_2 twdasCACGTGskawb UP00548B_1 sGgamrGrCACGTGtCsyhCysy MA0964.3 TCACGTGA MA2175.1 cCACGTGg MA2176.1 cCACGTGg MA2301.1 tCACGTGa MA2304.1 gCACGTGc |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). [Pubmed] Yuan J, Tirabassi RS, Bush AB, Cole MD. The C. elegans MDL-1 and MXL-1 proteins can functionally substitute for vertebrate MAD and MAX 17:1109-18 (Oncogene.). [Pubmed] Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] Zhu LJ, Christensen RG, Kazemian M, Hull CJ, Enuameh MS, Basciotta MD, Brasefield JA, Zhu C, Asriyan Y, Lapointe DS, Sinha S, Wolfe SA, Brodsky MH. FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system. Nucleic Acids Res : (2011). [Pubmed] Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife : (2015). [Pubmed] |
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