DNA Binding Site
| Accessions: | CCATATGG (UniPROBE 20160601), MA1343.2.14 (JASPAR 2024), UN0733.1.2 (JASPAR 2024), UN0733.1.3 (JASPAR 2024) |
| Organisms: | Caenorhabditis elegans, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCATATGG |
| Type: | Heterodimer |
| Binding TFs: | UP00359A (Helix-loop-helix DNA-binding domain, Neuronal helix-loop-helix transcription factor ) UP00371A (Helix-loop-helix DNA-binding domain) UP00378A (Helix-loop-helix DNA-binding domain) UP00381A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) Q8VWG0 (bZIP transcription factor, Basic region leucine zipper) Q11094 Q8VWG0 |
| Binding Motifs: | UP00359A_1 wkdraaaaraastm UP00371A_1 wtaAAwaAAacymw UP00378A_1 ctwwramwwwmmaw UP00381A_1 akwraTwagwaswm UP00359A_2 / UP00384A_2 mskaACAkCTGTyyaa UP00371A_2 / UP00384A_9 aymaACATmTGGtwkm UP00378A_2 / UP00384A_6 kktrmCAksTGkymmh UP00381A_2 / UP00384A_10 hmgamCAgcTGkymtc MA1343.2 TGmCAGCy UN0733.1 cCAGmTGg |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.