DNA Binding Motif
| Accessions: | UP00359A_1 (UniPROBE 20160601) |
| Names: | CND-1, hlh-5 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | wkdraaaaraastm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.25 0.18 0.22 0.35 w 02 0.21 0.13 0.35 0.31 k 03 0.26 0.08 0.33 0.33 d 04 0.40 0.07 0.34 0.19 r 05 0.56 0.14 0.16 0.14 a 06 0.58 0.13 0.08 0.21 a 07 0.56 0.12 0.18 0.13 a 08 0.62 0.07 0.16 0.16 a 09 0.45 0.07 0.34 0.15 r 10 0.45 0.16 0.21 0.18 a 11 0.45 0.24 0.07 0.24 a 12 0.17 0.34 0.25 0.24 s 13 0.22 0.17 0.15 0.47 t 14 0.41 0.29 0.21 0.09 m |
| Binding TFs: | UP00359A (Helix-loop-helix DNA-binding domain, Neuronal helix-loop-helix transcription factor ) |
| Binding Sites: | AACAGATG AACAGCTG AACATATG ACAGCTGT TTAATTAA AACATCTG AATTTAGT ACAGATGG ACAGATGT ACATATGG ACATATGT ACATCTGG ACCAGATG ACCATATG CAGATGGC CATATGGA CATCTGTC CCAGATGG CCATATGG TGTTAACA |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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