DNA Binding Motif
| Accessions: | UP00050A_2 (UniPROBE 20160601) |
| Names: | basic helix-loop-helix domain containing, Bhlhb2, C130042M06Rik, Class B basic helix-loop-helix protein 2, class B2, Clast5, CR8, cytokine response gene 8, Dec1, E47 interaction protein 1, eip1 (E47 interaction protein 1), eipl, Sharp2, Stimulated with retinoic acid 13, Stra13, Stra14 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 23 |
| Consensus: | ygysryTmCACGTGGArrsmrgt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.12 0.34 0.12 0.41 y 02 0.22 0.17 0.42 0.19 g 03 0.13 0.26 0.10 0.51 y 04 0.14 0.41 0.29 0.17 s 05 0.30 0.16 0.30 0.25 r 06 0.22 0.29 0.15 0.34 y 07 0.05 0.03 0.12 0.80 T 08 0.52 0.29 0.17 0.02 m 09 0.05 0.94 0 0 C 10 0.90 0.01 0.07 0.02 A 11 0 0.97 0.01 0.02 C 12 0.02 0.01 0.97 0 G 13 0.02 0.07 0.01 0.90 T 14 0 0 0.94 0.05 G 15 0 0.09 0.69 0.22 G 16 0.80 0.12 0.03 0.05 A 17 0.33 0.16 0.28 0.24 r 18 0.28 0.13 0.45 0.14 r 19 0.13 0.25 0.42 0.19 s 20 0.40 0.43 0.05 0.12 m 21 0.28 0.12 0.42 0.19 r 22 0.16 0.09 0.65 0.10 g 23 0.20 0.17 0.11 0.52 t |
| Binding TFs: | UP00050A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACACGTG ACACGTGA ACACGTGC AGCACGTG ATCACGTG CACACGTG CACGCGAC CACGTGAA CACGTGAC CACGTGAG CACGTGCA CACGTGCC CACGTGCG CACGTGGA CACGTGTA CACGTGTC CCACGTGA CCACGTGC GCACGTGC TCACGTGA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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