DNA Binding Site
| Accessions: | ACATGTAT (UniPROBE 20160601), MA2051.2.20 (JASPAR 2024) |
| Organisms: | Mus musculus, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ACATGTAT |
| Type: | Heterodimer |
| Binding TFs: | UP00150A (Homeobox domain, Homeobox KN domain) UP00194A (Homeobox domain, Homeobox KN domain) UP00236A (Homeobox domain, Homeobox KN domain) UP00250A (Homeobox domain, Homeobox KN domain) UP00223A (Homeobox domain, Homeobox KN domain) A8MQY1 (No apical meristem (NAM) protein) A8MQY1 |
| Binding Motifs: | UP00150A_1 wawrTACATGTAmwwwT UP00194A_1 wawrwACATGTwawwcw UP00223A_1 wrwrTACATGTAawwyw UP00236A_1 wwdrTACATGTAarwkw UP00250A_1 wwwawACATGTwawwkw UP00223A_2 wwdaTACATGTAawwyw MA2051.2 ACAAGTaw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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