Transcription Factor
| Accessions: | T18768 (AthalianaCistrome v4_May2016), A8MQY1 (JASPAR 2024) |
| Names: | AT4G01540, NTM1, T18768;, ANAC068, NAC domain-containing protein 68, NAC68_ARATH, Protein NAC WITH TRANSMEMBRANE MOTIF 1, Protein NTM1-like 12 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 473 |
| Pfam Domains: | 6-136 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MMKGLIGYRFSPTGEEVINHYLKNKLLGKYWLVDEAISEINILSHKPSKDLPKLARIQSE 60 61 DLEWYFFSPIEYTNPNKMKMKRTTGSGFWKPTGVDREIRDKRGNGVVIGIKKTLVYHEGK 120 121 SPHGVRTPWVMHEYHITCLPHHKRKYVVCQVKYKGEAAEISYEPSPSLVSDSHTVIAITG 180 181 EPEPELQVEQPGKENLLGMSVDDLIEPMNQQEEPQGPHLAPNDDEFIRGLRHVDRGTVEY 240 241 LFANEENMDGLSMNDLRIPMIVQQEDLSEWEGFNADTFFSDNNNNYNLNVHHQLTPYGDG 300 301 YLNAFSGYNEGNPPDHELVMQENRNDHMPRKPVTGTIDYSSDSGSDAGSISTTSYQGTSS 360 361 PNISVGSSSRHLSSCSSTDSCKDLQTCTDPSIISREIRELTQEVKQEIPRAVDAPMNNES 420 421 SLVKTEKKGLFIVEDAMERNRKKPRFIYLMKMIIGNIISVLLPVKRLIPVKKL |
| Interface Residues: | 74, 79, 90, 92, 94, 117, 121, 122, 123, 126 |
| 3D-footprint Homologues: | 3swp_A, 7xp3_B |
| Binding Motifs: | M0646 aCTTsttymhyAAGT M0681 aaaaaaaarraAAAAGyaaaw UN0378.1 wwgTTACTTrkwwcACAAGTtaww MA2051.1 wwACAAGTawww MA2051.2 ACAAGTaw |
| Binding Sites: | MA2051.2.20 MA2051.2.3 UN0378.1.5 UN0378.1.6 UN0378.1.19 UN0378.1.20 UN0378.1.3 UN0378.1.4 UN0378.1.14 UN0378.1.17 UN0378.1.18 UN0378.1.13 UN0378.1.1 UN0378.1.10 UN0378.1.11 UN0378.1.12 UN0378.1.15 UN0378.1.16 UN0378.1.2 UN0378.1.7 UN0378.1.8 UN0378.1.9 MA2051.1.15 MA2051.1.17 MA2051.1.1 MA2051.1.10 MA2051.1.11 MA2051.1.12 MA2051.1.13 MA2051.1.14 MA2051.1.16 MA2051.1.18 MA2051.1.19 MA2051.1.2 MA2051.1.20 MA2051.1.3 MA2051.1.4 MA2051.1.5 MA2051.1.6 MA2051.1.7 MA2051.1.8 MA2051.1.9 MA2051.2.1 / MA2051.2.13 / MA2051.2.7 / MA2051.2.8 MA2051.2.10 / MA2051.2.14 MA2051.2.11 MA2051.2.12 / MA2051.2.19 MA2051.2.15 MA2051.2.16 / MA2051.2.4 MA2051.2.17 MA2051.2.18 / MA2051.2.2 MA2051.2.5 MA2051.2.6 MA2051.2.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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