DNA Binding Site
| Accessions: | CCAGCTGG (UniPROBE 20160601), MA0126.2.2 (JASPAR 2024), UN0733.1.6 (JASPAR 2024), UN0733.1.7 (JASPAR 2024) |
| Organisms: | Caenorhabditis elegans, Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCAGCTGG |
| Type: | Heterodimer |
| Binding TFs: | P51521 (Zinc finger, C2H2 type, Zinc-finger double domain) UP00358A (Helix-loop-helix DNA-binding domain) UP00361A (Helix-loop-helix DNA-binding domain) UP00378A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) P51521 Q11094 |
| Binding Motifs: | UP00358A_1 wAyyAwATwTrgmm UP00361A_1 agwaaaawrwhdwr UP00378A_1 ctwwramwwwmmaw UP00358A_2 / UP00384A_3 yvsamCACCTGTTmcrg UP00361A_2 / UP00384A_5 rrmsCAsCTGbGccmt UP00378A_2 / UP00384A_6 kktrmCAksTGkymmh MA0126.2 wgtAACwG UN0733.1 cCAGmTGg |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] Lee S., Garfinkel M. D. Characterization of Drosophila OVO protein DNA binding specificity using random DNA oligomer selection suggests zinc finger degeneration.. Nucleic Acids Res. 28:826-834 (2000). [Pubmed] |
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