DNA Binding Motif
| Accessions: | MA0126.2 (JASPAR 2024), MA0239.2 (JASPAR 2024) |
| Names: | ovo, prd |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | SELEX, bacterial 1-hybrid |
| Length: | 8 |
| Consensus: | wgtAACwG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 10 4 0 7 w 02 1 4 14 2 g 03 4 2 2 13 t 04 20 0 0 1 A 05 21 0 0 0 A 06 0 21 0 0 C 07 7 5 3 6 w 08 0 0 21 0 G |
| Type: | Heterodimer |
| Binding TFs: | P51521 (Zinc finger, C2H2 type, Zinc-finger double domain) P06601 P51521 |
| Binding Sites: | MA0126.2.3 MA0239.2.10 MA0239.2.14 MA0126.2.2 MA0126.2.1 MA0126.2.10 MA0126.2.11 MA0126.2.12 MA0126.2.13 MA0126.2.14 MA0126.2.15 MA0126.2.16 MA0126.2.17 MA0126.2.18 MA0126.2.19 MA0126.2.20 MA0126.2.4 MA0126.2.5 MA0126.2.6 MA0126.2.7 MA0126.2.8 MA0126.2.9 MA0239.2.1 MA0239.2.11 MA0239.2.12 MA0239.2.13 MA0239.2.15 MA0239.2.16 MA0239.2.17 MA0239.2.18 MA0239.2.19 MA0239.2.2 MA0239.2.20 MA0239.2.3 MA0239.2.4 MA0239.2.5 MA0239.2.6 MA0239.2.7 MA0239.2.8 MA0239.2.9 |
| Publications: | Lee S., Garfinkel M. D. Characterization of Drosophila OVO protein DNA binding specificity using random DNA oligomer selection suggests zinc finger degeneration.. Nucleic Acids Res. 28:826-834 (2000). [Pubmed] Meng X, Brodsky M.H, Wolfe S.A. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nature biotechnology 23:988-94 (2005). [Pubmed] |
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