DNA Binding Site
| Accessions: | TGACGTAA (UniPROBE 20160601), MA0126.2.3 (JASPAR 2024), UN0729.1.5 (JASPAR 2024), UN0729.1.7 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Arabidopsis thaliana, Drosophila melanogaster, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | TGACGTAA |
| Type: | Heterodimer |
| Binding TFs: | UP00454A (bZIP transcription factor) UP00464A (bZIP transcription factor, Basic region leucine zipper, Aft1 osmotic stress response (OSM) domain) P51521 (Zinc finger, C2H2 type, Zinc-finger double domain) UP00020A (bZIP transcription factor, Basic region leucine zipper) UP00084A (SAND domain) UP00103A (bZIP transcription factor, Basic region leucine zipper) UP00455A (bZIP transcription factor, Basic region leucine zipper) UP00578A (No apical meristem (NAM) protein) P51521 Q4JFH9 |
| Binding Motifs: | UP00020A_1 ackrTGACGTCAycra UP00084A_1 smkkkkRCGYmmgayrs UP00103A_1 csgaTGACGTCAycry UP00020A_2 gdaTGACGaryAwm UP00084A_2 kgrkcrACGTygtymw UP00103A_2 mdkgrTGAsTCAymam UP00454A_1 whkktgmTTACGTAAkmycswk UP00455A_1 / UP00455A_2 maghygaTGACGTCAyyrtccw UP00455A_3 rTGACGTkyr UP00464A_1 / UP00464A_2 mhhkmmgATGACGTAwkmrrtt UP00464A_3 TGACGTCA UP00578A_1 kaTTACGCAAyC UP00578A_2 gGTTGCGTAAyy MA0126.2 wgtAACwG UN0729.1 TGACGTCA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Lee S., Garfinkel M. D. Characterization of Drosophila OVO protein DNA binding specificity using random DNA oligomer selection suggests zinc finger degeneration.. Nucleic Acids Res. 28:826-834 (2000). [Pubmed] |
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