DNA Binding Site
| Accessions: | CATTGTTC (UniPROBE 20160601), PF0049.1.11 (JASPAR 2024), PF0049.1.12 (JASPAR 2024), PF0049.1.3 (JASPAR 2024), PF0049.1.7 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CATTGTTC |
| Type: | Heterodimer |
| Binding TFs: | UP00030A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00069A (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor) UP00401A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Motifs: | UP00069A_7 khtaATTATAATwwdm UP00069A_11 mwaAACAATTrAwhw UP00030A_1 / UP00069A_1 wkwarAACAAWGraywa UP00069A_13 twyhATTGTTbtmamw UP00069A_15 wwtyaATTcAwTamdk UP00069A_9 wrkwgAACAATwrrtwt UP00069A_5 wtwrgAACAATwwwtw UP00069A_3 twATTGTTcthawh UP00401A_1 tadAACAAwGrvrw UP00069A_8 ykyasACAATrgmks UP00069A_12 gwycacATTCAtryrat UP00030A_2 / UP00069A_2 arAATTGTywkrrw UP00069A_14 gkrsyraATtyrwdhm UP00069A_10 btramTGwmATtysr UP00069A_16 myaTaATTGTTakys UP00069A_4 mmwyasACAAAGrawt UP00069A_6 rtrytGGgtGGGwawwt PF0049.1 CATTGTyy |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed] |
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