DNA Binding Motif

						

			
Accessions: UP00401A_1 (UniPROBE 20160601)

			
Names: ecotropic viral integration site 16, EVI16, OTTHUMP00000039358, Sox4, SRY (sex determining region Y)-box 4, SRY-related HMG-box gene 4, Transcription factor SOX-4
Organisms: Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 14
Consensus: tadAACAAwGrvrw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.25   0.20   0.23   0.33      t
02   0.37   0.17   0.24   0.23      a
03   0.31   0.11   0.29   0.29      d
04   0.76   0.03   0.16   0.05      A
05   0.95      0      0   0.04      A
06      0   0.94   0.02   0.04      C
07   0.98      0   0.01   0.01      A
08   0.98   0.01      0      0      A
09   0.62   0.01   0.01   0.37      w
10   0.14   0.01   0.84   0.01      G
11   0.30   0.14   0.55   0.01      r
12   0.27   0.33   0.32   0.08      v
13   0.30   0.23   0.29   0.18      r
14   0.28   0.23   0.16   0.33      w
Binding TFs: UP00401A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: AAACAAAG
AAACAATA
AAACAATG
AACAAAGA
AACAAAGG
AACAATAG
AACAATGA
AACAATGG
ACAAAGAA
ACAAAGAG
ACAAAGGA
ACAAAGGG
AGACAAAG
AGACAATG
ATTGTTCC
ATTGTTTG
CAACAATA
CATTGTTC
CTTTGTTA
CTTTGTTC
			
Publications: Scharer CD, McCabe CD, Ali-Seyed M, Berger MF, Bulyk ML, Moreno CS. Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer. Cancer Research. January 15, 2009. 69(2). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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