DNA Binding Site
| Accessions: | CCACTCAA (UniPROBE 20160601), MA1645.2.14 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCACTCAA |
| Type: | Heterodimer |
| Binding TFs: | O95096 (Homeobox domain) UP00107A (Homeobox domain) UP00119A (Homeobox domain) UP00165A (Homeobox domain) UP00605A (Homeobox domain) UP00605B (Homeobox domain) O95096 |
| Binding Motifs: | UP00107A_1 waarCCACTTrAmwty UP00119A_1 wttwrAGTACTyrAaty UP00165A_1 yaAgCCACTTgAmhtt UP00605A_1 twwrrrdCCACTyGAvwtysks UP00605B_1 twtrrrkCCACTygAvwtygks MA1645.2 CCACTCAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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