DNA Binding Motif
| Accessions: | UP00029A_1 (UniPROBE 20160601) |
| Names: | GTF2D, GTF2D1, HDL4, MGC117320, MGC126054, MGC126055, SCA17, TATA sequence-binding protein, TATA-binding factor, TATA-box factor, TATA-box-binding protein, TBP, Transcription initiation factor TFIID TBP subunit |
| Organisms: | Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | yywwwwTATAwwwmta |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.27 0.22 0.29 y 02 0.12 0.40 0.12 0.35 y 03 0.29 0.23 0.12 0.35 w 04 0.38 0.10 0.11 0.41 w 05 0.27 0.04 0.02 0.67 w 06 0.65 0.01 0.01 0.34 w 07 0.08 0.01 0 0.91 T 08 0.77 0 0 0.23 A 09 0.23 0 0 0.77 T 10 0.91 0 0.01 0.08 A 11 0.34 0.01 0.01 0.65 w 12 0.67 0.02 0.04 0.27 w 13 0.47 0.11 0.10 0.32 w 14 0.37 0.29 0.10 0.24 m 15 0.20 0.13 0.22 0.45 t 16 0.35 0.22 0.23 0.20 a |
| Binding TFs: | UP00029A (Transcription factor TFIID (or TATA-binding protein, TBP)) |
| Binding Sites: | AAATATAT AATATATA AATATATT ATATAAAT ATATATAC ATATATAG ATATATAT ATATATTA ATATATTG ATTATAAA ATTATATA CATATATA CTTATATA GATATATA TAAATATA TATAAATA TATATAAA TATATATA TATTTAAA TTATATAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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