DNA Binding Site
| Accessions: | AATATATT (UniPROBE 20160601) |
| Organisms: | Homo sapiens, Mus musculus, Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | AATATATT |
| Type: | Heterodimer |
| Binding TFs: | UP00337A (Transcription factor TFIID (or TATA-binding protein, TBP)) UP00255A (Homeobox domain) UP00268A (Homeobox domain) UP00294A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00029A (Transcription factor TFIID (or TATA-binding protein, TBP)) UP00589D (Fork head domain) UP00595C (Homeobox domain) UP00595D (Homeobox domain) UP00599D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00604D (Homeobox domain) UP00604E (Homeobox domain) UP00616D (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00255A_1 twrttaATTAwtaawwr UP00029A_1 yywwwwTATAwwwmta UP00268A_1 cgyddwtTAATTAawksgrm UP00294A_1 tkacctwtAATTawaybwsmw UP00337A_1 vwhtaGrwATATATAtwsrwd UP00029A_2 ccswtwwaasskabc UP00589D_1 rwwygyrTwwAaTAwAwrdAwr UP00595C_1 TwasksyATAATTAtwGgtwkdr UP00595D_1 dkwdwwATrTATAtATartrdv UP00599D_1 TamtwwTAATawATTAtbtwtm UP00604D_1 amaTtawatavrtatwywaTwa UP00604E_1 tawwywATrTwwATtAwytaAA UP00616D_1 tkwryyhATTATGCrkryakhm |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.