DNA Binding Motif
| Accessions: | UP00039A_1 (UniPROBE 20160601) |
| Names: | C330039G02Rik, DKFZp761E2211, forkhead box J3, Forkhead box protein J3, Foxj3, Kiaa1041, mKIAA1041 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | hraarRTAAACAAwsmc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.27 0.26 0.21 0.26 h 02 0.34 0.13 0.31 0.22 r 03 0.48 0.19 0.16 0.17 a 04 0.51 0.13 0.17 0.19 a 05 0.35 0.13 0.33 0.20 r 06 0.30 0.01 0.68 0 R 07 0.01 0.02 0 0.97 T 08 0.91 0.08 0 0 A 09 0.96 0.02 0 0.03 A 10 0.99 0 0 0.01 A 11 0 0.81 0 0.18 C 12 0.99 0 0 0.01 A 13 0.79 0.07 0.06 0.09 A 14 0.57 0.09 0.07 0.27 w 15 0.22 0.34 0.26 0.18 s 16 0.27 0.27 0.24 0.22 m 17 0.24 0.39 0.17 0.19 c |
| Binding TFs: | UP00039A (Fork head domain) |
| Binding Sites: | GTAAACAA AATAAACA AGTAAACA ATAAACAA ATAAACAC ATAAACAT ATGTTTAC ATTGTTTA CATAAACA CGTAAACA CTGTTTAC GATAAACA GGTAAACA GTAAACAC GTAAATAA GTTGTTTA TAAACAAA TAAACATA TATAAACA TGTAAACA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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