DNA Binding Site

Accessions: ATAAACAT (UniPROBE 20160601), MA0148.5.10 (JASPAR 2024)
Organisms: Mus musculus, Saccharomyces cerevisiae, Allomyces macrogynus, Homo sapiens
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: ATAAACAT
Type: Heterodimer
Binding TFs: UP00353A (Fork head domain, FHA domain)
P55317 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
UP00025A (Fork head domain)
UP00039A (Fork head domain)
UP00041A (Fork head domain)
UP00061A (Fork head domain)
UP00514A (Fork head domain)
UP00515A (Fork head domain)
UP00589A (Fork head domain)
UP00589C (Fork head domain)
UP00589G (Fork head domain)
P55317
Binding Motifs: UP00025A_1 wraAtGTAAACAAavrb
UP00039A_1 hraarRTAAACAAwsmc
UP00041A_1 awwrTAAACAaAmdkk
UP00061A_1 wwwatrTAAACAAwsrb
UP00353A_1 yrwwwtGTAAACAAarrrgr
UP00025A_2 cwaAymAyAACAhmy
UP00039A_2 awbrcCmwAACAwwksw
UP00041A_2 ayrtcAyAACAacac
UP00061A_2 awatyawAACAAmamm
UP00514A_1 dytwtwwGTAAACAAAvrkrww
UP00514A_2 msmakdcAyAAyAACAmawcdAs
UP00515A_1 wmrbtrtGatTGTTTAtcwtwhm
UP00515A_2 symmsagmmhAyAACAwwkggyk
UP00589A_1 wkagkywAwrTAAAyAwagrgrk
UP00589C_1 gwabcwwAartAAACAhwaykw
UP00589G_1 bmavkdwAtrTAAACAAwsrkdk
MA0148.5 GTAAACAT
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Zhang Y, Liu T, Meyer C.A, Eeckhoute J, Johnson D.S, Bernstein B.E, Nusbaum C, Myers R.M, Brown M, Li W, Liu X.S. Model-based analysis of ChIP-Seq (MACS). Genome biology 9:R137 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.