DNA Binding Site

						

			
Accessions: GTAAACAC (UniPROBE 20160601), MA0148.5.12 (JASPAR 2024), MA0148.5.14 (JASPAR 2024), MA0148.5.19 (JASPAR 2024), MA0148.5.4 (JASPAR 2024), MA1446.2.10 (JASPAR 2024), MA1446.2.17 (JASPAR 2024), MA1446.2.3 (JASPAR 2024), MA1446.2.7 (JASPAR 2024)

			
Organisms: Mus musculus, Saccharomyces cerevisiae, Allomyces macrogynus, Homo sapiens, Caenorhabditis elegans
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: GTAAACAC
Type: Heterodimer
Binding TFs: UP00353A (Fork head domain, FHA domain)
P55317 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
UP00025A (Fork head domain)
UP00039A (Fork head domain)
UP00041A (Fork head domain)
UP00061A (Fork head domain)
UP00073A (Fork head domain, Forkhead N-terminal region)
UP00312A (Fork head domain, FHA domain)
UP00514A (Fork head domain)
O16850 (Fork head domain)
O16850
P55317
Binding Motifs: UP00025A_1 wraAtGTAAACAAavrb
UP00039A_1 hraarRTAAACAAwsmc
UP00041A_1 awwrTAAACAaAmdkk
UP00061A_1 wwwatrTAAACAAwsrb
UP00073A_1 wawawGTAAAyAAwvab
UP00312A_1 tdwaawGTAAACAAAgrkrv
UP00353A_1 yrwwwtGTAAACAAarrrgr
UP00025A_2 cwaAymAyAACAhmy
UP00039A_2 awbrcCmwAACAwwksw
UP00041A_2 ayrtcAyAACAacac
UP00061A_2 awatyawAACAAmamm
UP00073A_2 rrwaaTAACAaasgs
UP00514A_1 dytwtwwGTAAACAAAvrkrww
UP00514A_2 msmakdcAyAAyAACAmawcdAs
MA0148.5 GTAAACAT
MA1446.2 GTAAACAc
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]


Zhang Y, Liu T, Meyer C.A, Eeckhoute J, Johnson D.S, Bernstein B.E, Nusbaum C, Myers R.M, Brown M, Li W, Liu X.S. Model-based analysis of ChIP-Seq (MACS). Genome biology 9:R137 (2008). [Pubmed]


Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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