DNA Binding Site
| Accessions: | ATTGTTTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Allomyces macrogynus, Drosophila melanogaster, Homo sapiens, Nematostella vectensis |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATTGTTTA |
| Type: | Heterodimer |
| Binding TFs: | UP00353A (Fork head domain, FHA domain) UP00016A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00039A (Fork head domain) UP00061A (Fork head domain) UP00307A (Homeobox domain, Homeobox KN domain) UP00514A (Fork head domain) UP00515A (Fork head domain) UP00520A (Fork head domain) UP00521A (Fork head domain) UP00530A (Fork head domain) UP00589A (Fork head domain) UP00589G (Fork head domain) |
| Binding Motifs: | UP00016A_1 khkwATTATAATrwtm UP00039A_1 hraarRTAAACAAwsmc UP00061A_1 wwwatrTAAACAAwsrb UP00307A_1 htdtwrAACAATAGwmytmc UP00353A_1 yrwwwtGTAAACAAarrrgr UP00016A_2 yydmdraACAATrrryg UP00039A_2 awbrcCmwAACAwwksw UP00061A_2 awatyawAACAAmamm UP00514A_1 dytwtwwGTAAACAAAvrkrww UP00514A_2 msmakdcAyAAyAACAmawcdAs UP00515A_1 wmrbtrtGatTGTTTAtcwtwhm UP00515A_2 symmsagmmhAyAACAwwkggyk UP00520A_1 wwwtawgrTAAACAAwyktgtk UP00520A_2 mbbamtrAtGACGCcAmkkmacy UP00521A_1 / UP00530A_1 dtakawsGTAAACAAwkkyrwh UP00521A_2 / UP00530A_2 mrtrygAyCGCGTCmTdawwrr UP00521A_3 aawswarrkGACGCyAhwwythk UP00521A_4 gakwwyrTGTAwACAAwmywab UP00521A_5 aawsdrrtmGACGCTAwdhyamg UP00521A_6 kahkawkRTAAACAAttryryw UP00589A_1 wkagkywAwrTAAAyAwagrgrk UP00589G_1 bmavkdwAtrTAAACAAwsrkdk |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.