DNA Binding Site
| Accessions: | ATAAACAC (UniPROBE 20160601), MA1446.2.18 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Allomyces macrogynus, Homo sapiens, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ATAAACAC |
| Type: | Heterodimer |
| Binding TFs: | UP00353A (Fork head domain, FHA domain) UP00039A (Fork head domain) UP00312A (Fork head domain, FHA domain) UP00515A (Fork head domain) UP00589A (Fork head domain) UP00589G (Fork head domain) O16850 (Fork head domain) O16850 |
| Binding Motifs: | UP00039A_1 hraarRTAAACAAwsmc UP00312A_1 tdwaawGTAAACAAAgrkrv UP00353A_1 yrwwwtGTAAACAAarrrgr UP00039A_2 awbrcCmwAACAwwksw UP00515A_1 wmrbtrtGatTGTTTAtcwtwhm UP00515A_2 symmsagmmhAyAACAwwkggyk UP00589A_1 wkagkywAwrTAAAyAwagrgrk UP00589G_1 bmavkdwAtrTAAACAAwsrkdk MA1446.2 GTAAACAc |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.