Transcription Factor
| Accessions: | Foxj3_DBD (HumanTF 1.0), UP00039A (UniPROBE 20160601) |
| Names: | Foxj3, FOXJ3_MOUSE, C330039G02Rik, DKFZp761E2211, forkhead box J3, Forkhead box protein J3, Kiaa1041, mKIAA1041 |
| Organisms: | Mus musculus |
| Libraries: | HumanTF 1.0 1, UniPROBE 20160601 2 1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] 2 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q8BUR3 |
| Description: | forkhead box J3: Mus musculus similar to Putative forkhead box protein KIAA1041 (LOC230700), mRNA |
| Notes: | Ensembl ID: ENSMUSG00000032998; DNA-binding domain sequence; TF family: Forkhead; Clone source: Hughes lab. |
| Length: | 132 |
| Pfam Domains: | 18-102 Fork head domain |
| Sequence: (in bold interface residues) | 1 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS 60 61 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDTLPTRPKKRARSVERASTP 120 121 YSIDSDSLGMEC |
| Interface Residues: | 15, 61, 63, 64, 65, 67, 68, 69, 71, 72, 75, 77, 78, 81, 88, 109 |
| 3D-footprint Homologues: | 7yzb_A, 7vox_H, 2hdc_A, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 7tdx_A, 3l2c_A, 2a07_J, 6nce_A, 2uzk_A, 7vou_C, 2c6y_A, 3qrf_G, 2o4a_A |
| Binding Motifs: | UP00039A_1 hraarRTAAACAAwsmc Foxj3_DBD_1 ACGGACACAAT Foxj3_DBD_2 GTAAACArTmAACA Foxj3_DBD_3 rTAAACAa Foxj3_DBD_4 rTAAACAwAAACA UP00039A_2 awbrcCmwAACAwwksw |
| Binding Sites: | GTAAACAA AATAAACA AGTAAACA ATAAACAA ATAAACAC ATAAACAT ATGTTTAC ATTGTTTA CATAAACA CGTAAACA CTGTTTAC GATAAACA GGTAAACA GTAAACAC GTAAATAA GTTGTTTA TAAACAAA TAAACATA TATAAACA TGTAAACA |
| Publications: | Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.