Transcription Factor
| Accessions: | UP00287A (UniPROBE 20160601) |
| Names: | Gat1, MEP80, NIL1, Transcriptional regulatory protein GAT1, YFL021W |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P43574 |
| Description: | Transcriptional activator of genes involved in nitrogen catabolite repression, member of the GATA family of DNA binding proteins; activity and localization regulated by nitrogen limitation and Ure2p |
| Length: | 135 |
| Pfam Domains: | 51-84 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 NPSPSIVKPGSRRNSSVRKKKPALKKIKSSTSVQSSATPPSNTSSNPDIKCSNCTTSTTP 60 61 LWRKDPKGLPLCNACGLFLKLHGVTRPLSLKTDIIKKRQRSSTKINNNITPPPSSSLNPG 120 121 AAGKKKNYTASVAAS |
| Interface Residues: | 60, 61, 63, 73, 77, 78, 81, 98, 100 |
| 3D-footprint Homologues: | 1gat_A, 3dfx_B, 4gat_A, 3vd6_C |
| Binding Motifs: | UP00287A_1 yyatytyCTTATCgsrddhh |
| Binding Sites: | AAGATAAG ACGATAAG AGATAAGA AGATAAGC ATGATAAG CCGATAAG CCTTATCA CCTTATCG CGATAACG CGATAAGA CGATAAGC CTCTTATC CTGATAAG CTTATCAA CTTATCGC CTTATCTA GATAAGAA GATAAGGA GCTTATCA TCTTATCA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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