DNA Binding Site

Accessions: CGATAAGA (UniPROBE 20160601)
Organisms: Mus musculus, Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: CGATAAGA
Type: Heterodimer
Binding TFs: UP00347A (GATA zinc finger)
UP00080A (GATA zinc finger)
UP00100A (GATA zinc finger)
UP00287A (GATA zinc finger)
UP00318A (GATA zinc finger)
UP00032A (GATA zinc finger)
Binding Motifs: UP00032A_1 bkwdwakAGATAAGArwtdarg
UP00080A_1 wwwrcTGATAAGrrgat
UP00100A_1 wawmkwGATAAGarttr
UP00287A_1 yyatytyCTTATCgsrddhh
UP00318A_1 rkwwhGsCcTTATCarsmmwa
UP00347A_1 twvmrrCYGATAAGrrwkwh
UP00032A_2 ytwtrywGATtktATCrrbwhm
UP00080A_2 rmcmrAGATATCwgybk
UP00100A_2 gsgrCGATATCGsmgyd
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.