DNA Binding Site

Accessions: ATGATAAG (UniPROBE 20160601), UN0736.1.13 (JASPAR 2024), UN0736.1.15 (JASPAR 2024)
Organisms: Saccharomyces cerevisiae, Caenorhabditis elegans
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: ATGATAAG
Type: Heterodimer
Binding TFs: UP00347A (GATA zinc finger)
UP00287A (GATA zinc finger)
UP00318A (GATA zinc finger)
G5ED66
Binding Motifs: UP00287A_1 yyatytyCTTATCgsrddhh
UP00318A_1 rkwwhGsCcTTATCarsmmwa
UP00347A_1 twvmrrCYGATAAGrrwkwh
UN0736.1 ckGATwAG
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

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