DNA Binding Site
| Accessions: | ATGATAAG (UniPROBE 20160601), UN0736.1.13 (JASPAR 2024), UN0736.1.15 (JASPAR 2024) |
| Organisms: | Saccharomyces cerevisiae, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ATGATAAG |
| Type: | Heterodimer |
| Binding TFs: | UP00347A (GATA zinc finger) UP00287A (GATA zinc finger) UP00318A (GATA zinc finger) G5ED66 |
| Binding Motifs: | UP00287A_1 yyatytyCTTATCgsrddhh UP00318A_1 rkwwhGsCcTTATCarsmmwa UP00347A_1 twvmrrCYGATAAGrrwkwh UN0736.1 ckGATwAG |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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