DNA Binding Site
| Accessions: | CTTATCTA (UniPROBE 20160601), MA1398.3.11 (JASPAR 2024), MA1398.3.12 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CTTATCTA |
| Type: | Heterodimer |
| Binding TFs: | UP00347A (GATA zinc finger) UP00080A (GATA zinc finger) UP00100A (GATA zinc finger) UP00287A (GATA zinc finger) Q9LVS0 (Myb-like DNA-binding domain) UP00032A (GATA zinc finger) Q9LVS0 |
| Binding Motifs: | UP00032A_1 bkwdwakAGATAAGArwtdarg UP00080A_1 wwwrcTGATAAGrrgat UP00100A_1 wawmkwGATAAGarttr UP00287A_1 yyatytyCTTATCgsrddhh UP00347A_1 twvmrrCYGATAAGrrwkwh UP00032A_2 ytwtrywGATtktATCrrbwhm UP00080A_2 rmcmrAGATATCwgybk UP00100A_2 gsgrCGATATCGsmgyd MA1398.3 CTTATCCa |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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