DNA Binding Site

Accessions: 1apl_A (3D-footprint 20231221), 1k61_E (3D-footprint 20231221)
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 20
Type: Heterodimer
Binding TFs: 1apl_D / 1k61_D (Homeobox domain, Homeobox KN domain)
1k61_B (Homeobox domain, Homeobox KN domain)
Binding Motifs: 1apl_CD TTGTAnTTnATnTACA
1apl_D TGTanTt
1k61_B TGTAntTnnnnnrC
Publications: Wolberger C., Vershon A. K., Liu B., Johnson A. D., Pabo C. O. Crystal structure of a MATalpha2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions. Cell 67:517-528 (1991). [Pubmed]

Aishima J, Gitti R.K, Noah J.E, Gan H.H, Schlick T, Wolberger C. A Hoogsteen base pair embedded in undistorted B-DNA. Nucleic acids research 30:5244-52 (2002). [Pubmed]

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