DNA Binding Motif

						

			
Accessions: 1k61_B (3D-footprint 20231221)

			
Names: Mating-type protein alpha-2
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: MATALPHA2 HOMEODOMAIN BOUND TO DNA
Length: 14
Consensus: TGTAntTnnnnnrC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      0      0      0     96      T
04     78      0     18      0      A
05     24     24     24     24      n
06     17     10      8     61      t
07      0      0     17     79      T
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     26     10     52      8      r
14      0     96      0      0      C
Binding TFs: 1k61_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 1k61_E
1k61_F
			
Publications: Aishima J, Gitti R.K, Noah J.E, Gan H.H, Schlick T, Wolberger C. A Hoogsteen base pair embedded in undistorted B-DNA. Nucleic acids research 30:5244-52 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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