DNA Binding Motif

						

			
Accessions: 1k61_ABCD (3D-footprint 20231221)

			
Names: Mating-type protein alpha-2
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: MATALPHA2 HOMEODOMAIN BOUND TO DNA
Length: 18
Consensus: GCTTGTAAAnGAATTACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      1     90      0      5      C
03      5     10     15     66      T
04      1      0      5     90      T
05      0      0     96      0      G
06      0      0      0     96      T
07     96      0      0      0      A
08     76      5      5     10      A
09     71     10      5     10      A
10     24     24     24     24      n
11      0      0     96      0      G
12     80      6      5      5      A
13     96      0      0      0      A
14      0      0      0     96      T
15      0      0      0     96      T
16     96      0      0      0      A
17      0     96      0      0      C
18     91      0      5      0      A
Type: Heterodimer
Binding TFs: 1k61_D (Homeobox domain, Homeobox KN domain)
1k61_A (Homeobox domain, Homeobox KN domain)
1k61_B (Homeobox domain, Homeobox KN domain)
1k61_C (Homeobox domain, Homeobox KN domain)
Binding Sites: 1k61_E
1k61_F
			
Publications: Aishima J, Gitti R.K, Noah J.E, Gan H.H, Schlick T, Wolberger C. A Hoogsteen base pair embedded in undistorted B-DNA. Nucleic acids research 30:5244-52 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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