DNA Binding Site
| Accessions: | CCGACATA (UniPROBE 20160601), MA1689.2.8 (JASPAR 2024), MA1689.2.9 (JASPAR 2024) |
| Organisms: | Arabidopsis lyrata, Zea mays |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCGACATA |
| Type: | Heterodimer |
| Binding TFs: | UP00555A (AP2 domain) UP00557A (AP2 domain) A0A060CYJ7 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) A0A060CYJ7 |
| Binding Motifs: | UP00555A_1 kkkrvtsATGTCGGCrrsgrtw UP00555A_2 kksavwgATGTCGGCrrkgakw UP00555A_3 kskrsysATGTCGGCrrsgkwg UP00555A_4 kkkrvysATGTCGRCgvkgsbh UP00555A_5 dkyrmwrATGTCGRCrvkgvty UP00555A_6 bgksgysATGTCGrCgmdgssr UP00557A_1 kkkrvtsATGTCGrCraggrth UP00557A_2 gkbrmwrATGTCGRCvmkgaty UP00557A_3 tsdrgysATGTCGrCrasgkmr UP00557A_4 kkkgsysATGTCGrYrakrwtm UP00557A_5 dkykcwrATGTCGrYrrkrmth UP00557A_6 tskrgysATGTCGrCrasgkwr MA1689.2 CCGACAAA |
| Publications: | Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). [Pubmed] Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.