Transcription Factor
| Accessions: | A0A060CYJ7 (JASPAR 2024) |
| Names: | A0A060CYJ7_MAIZE, Auxin response factor, Fragment |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 739 |
| Pfam Domains: | 3-61 B3 DNA binding domain 86-169 Auxin response factor 599-695 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRR 60 61 ANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLVKYVKAV 120 121 YHTRISVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGER 180 181 QPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLHGGKDDDLANSLMWLRDTANPGF 240 241 QSLNFGGLGMSPWMQPRLDATLLGLQPDMYQAMATAAFQDATKQASPTMLQFQQPQNIAG 300 301 RASPLLSSQILQQAHHQFQQQPYLQNISESTIQAQGQSEFLKQQIQRSQSFNEQKPQMQH 360 361 QQESQQQQQPQCLPVPQHQQMQQQNMTNYQSISNALSPFSQLSPVSQSSPMALQTILPFS 420 421 QAQSFTDTNVGSLSPSNGNTMQNTLRPFSSEAVSHLSMPRPTAIPVADPWSSKRVAVESL 480 481 LPSRPQVSSQMEQLDPAPASIPHSSALAPLPGRGCLVDQDVNSDPQNHLLFGVSIDSQSL 540 541 LMQGGIPGLQNGNDSAAIPYSTSNFLSPSQNDFPLDHTLNSSGCLDDSGYVPPCSDNSDK 600 601 VNRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLEDPLRSGWQLVFVD 660 661 REEDVLLVGDDPWQEFVSTVSCIKILSPQEVQQMGKQGLELLSSAPARRLGSSCDDYVSR 720 721 QESRSLSTGIASVGSVELG |
| Interface Residues: | 17, 19, 20, 22, 221, 223 |
| 3D-footprint Homologues: | 6ycq_A, 7et6_A, 8oj2_A, 8ftj_A |
| Binding Motifs: | MA1689.1 avCCGACAAArww MA1689.2 CCGACAAA |
| Binding Sites: | MA1689.2.8 / MA1689.2.9 MA1689.2.18 MA1689.1.1 MA1689.1.10 / MA1689.1.5 MA1689.1.11 MA1689.1.12 MA1689.1.13 / MA1689.1.7 MA1689.1.14 / MA1689.1.8 MA1689.1.15 / MA1689.1.9 MA1689.1.16 MA1689.1.17 MA1689.1.18 MA1689.1.19 MA1689.1.2 MA1689.1.10 / MA1689.1.20 MA1689.1.3 MA1689.1.4 MA1689.1.2 / MA1689.1.5 MA1689.1.3 / MA1689.1.6 MA1689.1.7 MA1689.1.4 / MA1689.1.8 MA1689.1.9 MA1689.1.11 MA1689.1.12 MA1689.1.13 MA1689.1.14 MA1689.1.15 MA1689.1.16 MA1689.1.17 MA1689.1.18 MA1689.1.19 MA1689.1.20 MA1689.1.6 MA1689.2.1 / MA1689.2.14 MA1689.2.10 / MA1689.2.19 MA1689.2.11 / MA1689.2.20 MA1689.2.12 MA1689.2.13 MA1689.2.15 / MA1689.2.17 MA1689.2.16 / MA1689.2.3 MA1689.2.2 MA1689.2.4 MA1689.2.5 MA1689.2.6 MA1689.2.7 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.