DNA Binding Motif

						

			
Accessions: UP00555A_2 (UniPROBE 20160601)

			
Names: DDF1, DREB1F, DWARF AND DELAYED FLOWERING1
Organisms: Arabidopsis lyrata
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: kksavwgATGTCGGCrrkgakw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.18   0.17   0.39   0.26      k
02   0.16   0.11   0.38   0.36      k
03   0.08   0.38   0.34   0.20      s
04   0.33   0.21   0.22   0.24      a
05   0.32   0.27   0.25   0.16      v
06   0.33   0.14   0.18   0.35      w
07   0.21   0.17   0.38   0.24      g
08   0.95   0.01   0.03   0.01      A
09   0.02   0.02   0.02   0.95      T
10      0      0   0.99      0      G
11      0      0      0   0.99      T
12      0   0.99      0      0      C
13      0      0   0.99      0      G
14   0.21      0   0.79      0      G
15      0   0.85      0   0.14      C
16   0.33   0.19   0.35   0.13      r
17   0.31   0.24   0.32   0.14      r
18   0.15   0.23   0.35   0.28      k
19   0.19   0.16   0.50   0.15      g
20   0.40   0.20   0.19   0.20      a
21   0.16   0.18   0.28   0.37      k
22   0.27   0.23   0.14   0.36      w
Binding TFs: UP00555A (AP2 domain)
Binding Sites: CGGCCGAC
AAGTCGGC
AATGTCGG
ACCGACAT
AGCCGACA
AGGTCGGC
ATGTCGAC
ATGTCGGC
CATGTCGG
CCGACATA
CCGACATC
CGCCGACA
CTGCCGAC
GCCGACAA
GCCGACAC
GGCCGACA
GTCGGCAA
TACCGACA
TGCCGACA
TGTCGACA
			
Publications: Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.