DNA Binding Motif
| Accessions: | MA1689.2 (JASPAR 2024) |
| Names: | ARF18 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 8 |
| Consensus: | CCGACAAA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 77 2334 50 336 C 02 346 2297 91 63 C 03 60 16 2698 23 G 04 2735 13 39 10 A 05 9 2746 25 17 C 06 2672 108 12 5 A 07 2292 154 209 142 A 08 2075 277 321 124 A |
| Type: | Heterodimer |
| Binding TFs: | A0A060CYJ7 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) A0A060CYJ7 |
| Binding Sites: | MA1689.2.8 / MA1689.2.9 MA1689.2.18 MA1689.2.1 / MA1689.2.14 MA1689.2.10 / MA1689.2.19 MA1689.2.11 / MA1689.2.20 MA1689.2.12 MA1689.2.13 MA1689.2.15 / MA1689.2.17 MA1689.2.16 / MA1689.2.3 MA1689.2.2 MA1689.2.4 MA1689.2.5 MA1689.2.6 MA1689.2.7 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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