DNA Binding Motif

Accessions: UP00555A_6 (UniPROBE 20160601)
Names: DDF1, DREB1F, DWARF AND DELAYED FLOWERING1
Organisms: Arabidopsis lyrata
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: bgksgysATGTCGrCgmdgssr
Weblogo:
PSSM: P0 A C G T
01 0.18 0.28 0.26 0.27 b
02 0.16 0.24 0.38 0.22 g
03 0.20 0.10 0.44 0.27 k
04 0.24 0.28 0.38 0.10 s
05 0.22 0.24 0.42 0.12 g
06 0.11 0.38 0.22 0.28 y
07 0.19 0.32 0.33 0.16 s
08 0.95 0.01 0.04 0.01 A
09 0.01 0.03 0.03 0.93 T
10 0.01 0 0.99 0 G
11 0 0 0 0.99 T
12 0 0.99 0 0 C
13 0 0 0.99 0 G
14 0.33 0 0.67 0 r
15 0 0.82 0.01 0.17 C
16 0.23 0.19 0.46 0.12 g
17 0.28 0.28 0.22 0.21 m
18 0.25 0.21 0.28 0.26 d
19 0.23 0.16 0.41 0.20 g
20 0.18 0.30 0.29 0.23 s
21 0.19 0.32 0.25 0.24 s
22 0.31 0.19 0.25 0.24 r
Binding TFs: UP00555A (AP2 domain)
Binding Sites: CGGCCGAC
AAGTCGGC
AATGTCGG
ACCGACAT
AGCCGACA
AGGTCGGC
ATGTCGAC
ATGTCGGC
CATGTCGG
CCGACATA
CCGACATC
CGCCGACA
CTGCCGAC
GCCGACAA
GCCGACAC
GGCCGACA
GTCGGCAA
TACCGACA
TGCCGACA
TGTCGACA
Publications: Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). [Pubmed]

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