DNA Binding Site
| Accessions: | 1apl_B (3D-footprint 20231221), 1k61_F (3D-footprint 20231221) |
| Organisms: | Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Length: | 20 |
| Sequence: | GCGTGTAAATGAATTACATG |
| Type: | Heterodimer |
| Binding TFs: | 1apl_D / 1k61_D (Homeobox domain, Homeobox KN domain) 1k61_B (Homeobox domain, Homeobox KN domain) |
| Binding Motifs: | 1apl_CD TTGTAnTTnATnTACA 1apl_D TGTanTt 1k61_ABCD GCTTGTAAAnGAATTACA 1k61_B TGTAntTnnnnnrC |
| Publications: | Wolberger C., Vershon A. K., Liu B., Johnson A. D., Pabo C. O. Crystal structure of a MATalpha2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions. Cell 67:517-528 (1991). [Pubmed] Aishima J, Gitti R.K, Noah J.E, Gan H.H, Schlick T, Wolberger C. A Hoogsteen base pair embedded in undistorted B-DNA. Nucleic acids research 30:5244-52 (2002). [Pubmed] |
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