DNA Binding Site
| Accessions: | GATTAATC (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | GATTAATC |
| Type: | Heterodimer |
| Binding TFs: | UP00224A (Homeobox domain, 'Paired box' domain) UP00078A (ARID/BRIGHT DNA binding domain) UP00111A (Homeobox domain) UP00112A (Homeobox domain) UP00143A (Homeobox domain) UP00176A (Homeobox domain) UP00219A (Homeobox domain, Homeobox KN domain) UP00265A (Homeobox domain) UP00267A (Homeobox domain) UP00208A (Homeobox domain) UP00615A / UP00615E (Homeobox domain) UP00615B (Homeobox domain) UP00615C (Homeobox domain) |
| Binding Motifs: | UP00219A_1 rccgrtTrATyAmswbr UP00219A_2 tarTgATrATcAmta UP00078A_1 sgktTTAATTAAwmtwy UP00111A_1 wdrwmmGGATTArkbww UP00112A_1 aawmryTAATCCsytwv UP00143A_1 rrmrGGGATTAAtyrtc UP00176A_1 ykwwGsGGATTArCck UP00208A_1 wdrrGGGATTAAwTywm UP00224A_1 TrayTAATTArtkvac UP00265A_1 rggGGGATTAgCtrsc UP00267A_1 kdwrgGGATTAAtydtc UP00078A_2 hmmvrtATcrdrtyk UP00208A_2 arragGGATTAAwTrwm UP00615A_1 kyysdtrgGGATTAAtwrkacs UP00615A_2 kkkcwwtyTAATCCcyykmawm UP00615B_1 wkwraaaAgGGATTArTagtrrr UP00615B_2 khysrwrrGGATTAAtwrkaCs UP00615C_1 mcgtmywATTAATCCyyhwrar UP00615E_1 kwtkmrrkGGATTArawwkaamt |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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