Transcription Factor
| Accessions: | UP00219A (UniPROBE 20160601) |
| Names: | AA407197, CCAAT displacement protein, CDP, cut-like 1 (Drosophila), Cutl1, Cux, Cux-1, Cux1, Homeobox protein cut-like 1, Homeobox protein Cux, Kiaa4047, MGC102214, mKIAA4047, Phox2, Protein CASP |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P70403 |
| Description: | cut-like 1 (Drosophila) |
| Length: | 93 |
| Pfam Domains: | 17-73 Homeobox domain 37-70 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 GIDYSQGASPQPQHQLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTV 60 61 INWFHNYRSRIRRELFIEEIQAGSQGQAGASDS |
| Interface Residues: | 17, 18, 19, 20, 61, 62, 65, 66, 69, 70, 73 |
| 3D-footprint Homologues: | 3cmy_A, 1fjl_B, 3d1n_M, 1ig7_A, 5zfz_A, 6a8r_A, 6m3d_C, 2lkx_A, 1nk2_P, 3lnq_A, 6es3_K, 7q3o_C, 2hos_A, 4xrs_G, 2d5v_B, 1au7_A, 5hod_A, 3l1p_A, 2hdd_A, 3a01_E, 1le8_A, 4j19_B, 2xsd_C, 7xrc_C, 1e3o_C, 2h1k_B, 6fqp_B, 4qtr_D, 1o4x_A, 1du0_A, 1jgg_B, 6fqq_E, 4xrm_B, 1puf_B, 8g87_X |
| Binding Motifs: | UP00219A_1 rccgrtTrATyAmswbr UP00219A_2 tarTgATrATcAmta |
| Binding Sites: | AGTGATCA ATGATCAA ATGATCAC ATGATCAT ATTGATCA ATTGATTA CCTAATCA CCTGATCA CTAATCAA CTGATCAA CTTAATCA CTTGATCA CTTGATTA GATGATCA GATTAATC GTGATCAA GTTGATCA TATGATCA TTAATCAA TTGATCAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.