Transcription Factor
| Accessions: | UP00208A (UniPROBE 20160601) |
| Names: | Not Available, Obox5, oocyte specific homeobox 5 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | oocyte specific homeobox 5 |
| Length: | 93 |
| Pfam Domains: | 17-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 DKYVNKQTGPMASRKFRKERTVYTKEQQRLLQKHFDECQYPNEKKIMELAVSVGVTKMEI 60 61 KIWFKNNRAKYRRMNLQNIKQALPESNESSKAV |
| Interface Residues: | 12, 15, 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73 |
| 3D-footprint Homologues: | 1mnm_C, 6a8r_A, 3d1n_M, 1ig7_A, 1puf_A, 5zfz_A, 2h1k_B, 3cmy_A, 1fjl_B, 1zq3_P, 2lkx_A, 1nk2_P, 7q3o_C, 6es3_K, 2ld5_A, 1b72_A, 2hos_A, 5jlw_D, 4cyc_A, 2d5v_B, 4xrs_G, 1jgg_B, 4j19_B, 3a01_E, 6m3d_C, 5flv_I, 3lnq_A, 1puf_B, 5zjt_E, 1au7_A, 2hdd_A, 7psx_B, 5hod_A, 3rkq_B, 2r5y_A, 1le8_A, 2xsd_C, 7xrc_C, 1e3o_C, 4xrm_B, 1o4x_A, 1le8_B, 1du0_A, 3l1p_A, 8g87_X, 1k61_B, 4qtr_D |
| Binding Motifs: | UP00208A_1 wdrrGGGATTAAwTywm UP00208A_2 arragGGATTAAwTrwm |
| Binding Sites: | AATAATCC AGATTAAA AGGATTAA AGGATTAT AGGGATTA ATAATCCC ATAATCCG ATTAATCC ATTTAATC CGGATTAA CTAATCCC CTTAATCC GAGATTAA GAGGATTA GATAATCC GATTAATC GGATTAAA GGATTAAC GGATTATA GGGGATTA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.