DNA Binding Site
| Accessions: | CGCCCCCG (UniPROBE 20160601), MA1819.2.3 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens, Zea mays |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CGCCCCCG |
| Type: | Heterodimer |
| Binding TFs: | UP00400A (Zinc finger, C2H2 type, Domain of unknown function (DUF3432), Domain of unknown function (DUF3446), Zinc-finger double domain, C2H2-type zinc finger) UP00007A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00587A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00600A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00600B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) A0A1D6ERG6 (AP2 domain) A0A1D6ERG6 |
| Binding Motifs: | UP00007A_1 yCCGCCCMCgCayt UP00400A_1 sakmkgmCgCCCmCGCAytrtym UP00007A_2 kkybGaGkGGGAywrk UP00587A_1 aawmtCcGCCCCCGCaytmmtm UP00600A_1 ythdwmmmCGCCCCCybskyam UP00600B_1 yywdacmmCGCCCCCybskbrm MA1819.2 CGCCGCCG |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.