DNA Binding Motif

						

			
Accessions: UP00400A_1 (UniPROBE 20160601)

			
Names: A530045N19Rik, early growth response 1, Early growth response protein 1, egr, Egr-1, ETR103, Krox-1, Krox-24, Krox-24 protein, Krox24, Nerve growth factor-induced protein A, NGF1-A, NGFI-A, NGFIA, TIS8, Transcription factor Zif268, Zenk, Zfp-6, Zif268
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: sakmkgmCgCCCmCGCAytrtym
Weblogo: 
PSSM: P0      A      C      G      T
01   0.10   0.41   0.25   0.23      s
02   0.64   0.07   0.14   0.15      a
03   0.20   0.17   0.35   0.29      k
04   0.36   0.26   0.15   0.23      m
05   0.20   0.24   0.28   0.28      k
06   0.23   0.20   0.32   0.24      g
07   0.27   0.46   0.11   0.15      m
08   0.07   0.72   0.07   0.14      C
09   0.11   0.08   0.66   0.15      g
10   0.03   0.97      0      0      C
11   0.01   0.98      0   0.01      C
12   0.01   0.88      0   0.11      C
13   0.62   0.36   0.02   0.01      m
14      0   0.98      0   0.01      C
15   0.12   0.03   0.78   0.07      G
16   0.02   0.82   0.02   0.13      C
17   0.71   0.08   0.13   0.08      A
18   0.17   0.25   0.11   0.47      y
19   0.23   0.22   0.16   0.39      t
20   0.27   0.22   0.27   0.24      r
21   0.14   0.23   0.15   0.49      t
22   0.14   0.30   0.14   0.42      y
23   0.27   0.32   0.23   0.18      m
Binding TFs: UP00400A (Zinc finger, C2H2 type, Domain of unknown function (DUF3432), Domain of unknown function (DUF3446), Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: CCGCCCCC
ACCCACGC
ACCCCCGC
ACGCCCAC
ACGCCCCC
CCCACGCA
CCCACGCG
CCCCCGCA
CCCCCGCC
CCGCCCAC
CGCCCACC
CGCCCACG
CGCCCCCA
CGCCCCCG
CGGGGGCA
CGTGGGCA
GCCCACGC
GCCCCCGC
GCGGGGGA
GCGTGGGA
			
Publications: Berger M.F, Philippakis A.A, Qureshi A.M, He F.S, Estep P.W, Bulyk M.L. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature biotechnology 24:1429-35 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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