DNA Binding Site
| Accessions: | GCGTGGGA (UniPROBE 20160601), UN0690.2.13 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GCGTGGGA |
| Type: | Heterodimer |
| Binding TFs: | UP00400A (Zinc finger, C2H2 type, Domain of unknown function (DUF3432), Domain of unknown function (DUF3446), Zinc-finger double domain, C2H2-type zinc finger) UP00480A (Ankyrin repeat, Ankyrin repeats (3 copies), Ankyrin repeat, Ankyrin repeats (many copies), Ankyrin repeats (many copies)) UP00481A (Ankyrin repeat, Ankyrin repeats (3 copies), Ankyrin repeat, Ankyrin repeats (many copies), Ankyrin repeats (many copies)) UP00484A (IPT/TIG domain, Beta-trefoil DNA-binding domain, LAG1, DNA binding) UP00485A (MamL-1 domain) UP00587D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627E (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) Q8LCG7 (Core histone H2A/H2B/H3/H4, Histone-like transcription factor (CBF/NF-Y) and archaeal histone) Q8LCG7 |
| Binding Motifs: | UP00400A_1 sakmkgmCgCCCmCGCAytrtym UP00480A_1 / UP00484A_1 tkwksmsCGTGGGAAccastsb UP00480A_5 / UP00484A_5 / UP00485A_1 ksmscgTGGGAayswst UP00480A_6 / UP00484A_6 / UP00485A_2 yckwwhscrTGGGAAmywkwkrg UP00480A_7 / UP00484A_7 / UP00485A_3 yykrcaycgTGGGAACcvcdwtg UP00481A_1 / UP00484A_8 / UP00485A_4 tmkrmaycvTGGGAAccmbdwkg UP00481A_2 / UP00484A_9 / UP00485A_5 cwckwwwsCrTGGGAAmhwktkd UP00484A_2 gvmsCGTGGGAAmywck UP00484A_3 yswrcmgCGTGGGAAccwstsk UP00587D_1 ktstwmyCCCMCGCAhtwtyaw UP00627D_1 kwtwywwCCCCCGCAyrwkyww UP00627E_1 gassrATGCGkGGGAwrdkwwa UN0690.2 ACGTGGCA |
| Publications: | Berger M.F, Philippakis A.A, Qureshi A.M, He F.S, Estep P.W, Bulyk M.L. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature biotechnology 24:1429-35 (2006). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.