DNA Binding Motif
| Accessions: | UP00316A_1 (UniPROBE 20160601) |
| Names: | AP-1-like transcription factor YAP6, HAL7, Yap6, YD9320A.09C, YD9320A.10C, YDR259C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | sgkywgmTTAyGTaAkcrrc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.17 0.30 0.37 0.16 s 02 0.23 0.14 0.59 0.04 g 03 0.13 0.09 0.33 0.44 k 04 0.11 0.43 0.11 0.34 y 05 0.25 0.23 0.07 0.44 w 06 0.04 0.11 0.65 0.20 g 07 0.49 0.41 0.04 0.06 m 08 0.03 0.02 0.06 0.89 T 09 0.03 0.02 0.11 0.84 T 10 0.89 0.03 0.05 0.03 A 11 0.04 0.56 0.10 0.30 y 12 0.17 0.05 0.72 0.06 G 13 0.07 0.09 0.04 0.81 T 14 0.65 0.19 0.06 0.10 a 15 0.83 0.06 0.07 0.03 A 16 0.16 0.08 0.48 0.28 k 17 0.23 0.47 0.14 0.16 c 18 0.34 0.09 0.43 0.15 r 19 0.43 0.13 0.30 0.14 r 20 0.17 0.44 0.24 0.15 c |
| Binding TFs: | UP00316A (bZIP transcription factor) |
| Binding Sites: | AAAGAAAG AAGAGGGG AAGGGGGA ACGTAATC AGGGGGAG ATTTCTTC ATTTTTTC CCTCCCCC CTCCCCCC GAAAAAAA GAGGGGGA GGGGGAAA GGGGGAGA TCCCCCAA TGAAAAAA TTACATAA TTACGTAA ATTTCAAA CCCCCTTC GAAAAAGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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