DNA Binding Site

Accessions: GAAAAAAA (UniPROBE 20160601), MA0479.2.6 (JASPAR 2024)
Organisms: Mus musculus, Saccharomyces cerevisiae, Homo sapiens
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: GAAAAAAA
Type: Heterodimer
Binding TFs: UP00316A (bZIP transcription factor)
O75593 (Fork head domain)
UP00077A (SRF-type transcription factor (DNA-binding and dimerisation domain))
UP00342A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00589D (Fork head domain)
O75593
Binding Motifs: UP00077A_1 wwCCwwATwwGGwa
UP00316A_1 sgkywgmTTAyGTaAkcrrc
UP00342A_1 wywrdrAAAAwTTTTyywykg
UP00077A_2 stwwaaAaAAAammtwh
UP00589D_1 rwwygyrTwwAaTAwAwrdAwr
MA0479.2 AATMCACA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Zhou S, Zawel L, Lengauer C, Kinzler K.W, Vogelstein B. Characterization of human FAST-1, a TGF beta and activin signal transducer. Molecular cell 2:121-7 (1998). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.