DNA Binding Motif
| Accessions: | UP00578A_1 (UniPROBE 20160601) |
| Names: | ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12, At1g32770, F6N18_15, F6N18.15, NAC Domain transcription factor SND1, NAC domain-containing protein 12, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC012, NST3, Protein NAC SECONDARY WALL THICKENING PROMOTING 3, Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, SND1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 12 |
| Consensus: | kaTTACGCAAyC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.23 0.14 0.31 0.31 k 02 0.53 0.10 0.18 0.18 a 03 0.01 0.04 0.01 0.95 T 04 0 0.02 0 0.98 T 05 0.99 0 0 0 A 06 0.03 0.97 0 0 C 07 0 0 0.98 0.02 G 08 0 0.96 0 0.04 C 09 0.81 0.02 0 0.16 A 10 0.99 0 0 0.01 A 11 0.09 0.51 0.06 0.34 y 12 0.11 0.78 0.07 0.04 C |
| Binding TFs: | UP00578A (No apical meristem (NAM) protein) |
| Binding Sites: | TGACGTAA TTACGCAA TTACGTAA AAGCAACC ACACGCAA ACGCAACC ACGCAATC ATAGCGTA ATTGCGTA CACGCAAC CTACGCAA CTACGCTA CTACGTTA CTTGCGTA GTAACGTA GTAGCGTA GTTGCGTA TAACGTAA TAGCGTAA TGGCGTAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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