DNA Binding Site
| Accessions: | TTACGCAA (UniPROBE 20160601), MA1702.2.11 (JASPAR 2024) |
| Organisms: | Mus musculus, Arabidopsis thaliana, Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | TTACGCAA |
| Type: | Heterodimer |
| Binding TFs: | UP00084A (SAND domain) UP00572A (No apical meristem (NAM) protein) UP00575A (No apical meristem (NAM) protein) UP00576A (No apical meristem (NAM) protein) UP00578A (No apical meristem (NAM) protein) UP00580A (No apical meristem (NAM) protein) UP00581A Q24217 (bZIP transcription factor, Basic region leucine zipper) Q24217 |
| Binding Motifs: | UP00084A_1 smkkkkRCGYmmgayrs UP00084A_2 kgrkcrACGTygtymw UP00572A_1 myACACGCAAycd UP00572A_2 htACACGCAAcck UP00572A_3 cwACACGCAACC UP00572A_4 wtACACGCAACck UP00575A_1 waTTACGCAAyc UP00575A_2 swaCACGCaAycw UP00576A_1 stACACGCAAcC UP00576A_2 gggTAAGkAAwht UP00578A_1 kaTTACGCAAyC UP00578A_2 gGTTGCGTAAyy UP00580A_1 waCACGymACyb UP00580A_2 rkACACGsAACy UP00581A_1 dvGGTwGCGTAa UP00581A_2 hdAGTCAACGyhr MA1702.2 TTATGYAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife : (2015). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.