Transcription Factor
| Accessions: | UP00578A (UniPROBE 20160601) |
| Names: | ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12, At1g32770, F6N18_15, F6N18.15, NAC Domain transcription factor SND1, NAC domain-containing protein 12, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC012, NST3, Protein NAC SECONDARY WALL THICKENING PROMOTING 3, Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, SND1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | NAC Domain transcription factor SND1: Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulates the secondary cell wall lignification of other t |
| Length: | 203 |
| Pfam Domains: | 16-144 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MADNKVNLSINGQSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWD 60 61 IQEECRIGSTPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRK 120 121 TLVFYKGRAPHGQKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNY 180 181 QKIDDCPKITLSSLPDDTEEEKG |
| Interface Residues: | 85, 90, 92, 101, 103, 105, 125, 129, 130, 131, 134 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | UP00578A_1 kaTTACGCAAyC UP00578A_2 gGTTGCGTAAyy |
| Binding Sites: | TGACGTAA TTACGCAA TTACGTAA AAGCAACC ACACGCAA ACGCAACC ACGCAATC ATAGCGTA ATTGCGTA CACGCAAC CTACGCAA CTACGCTA CTACGTTA CTTGCGTA GTAACGTA GTAGCGTA GTTGCGTA TAACGTAA TAGCGTAA TGGCGTAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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