DNA Binding Motif

Accessions: UP00578A_2 (UniPROBE 20160601)
Names: ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12, At1g32770, F6N18_15, F6N18.15, NAC Domain transcription factor SND1, NAC domain-containing protein 12, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC012, NST3, Protein NAC SECONDARY WALL THICKENING PROMOTING 3, Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, SND1
Organisms: Arabidopsis thaliana
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 12
Consensus: gGTTGCGTAAyy
Weblogo:
PSSM: P0 A C G T
01 0.14 0.05 0.62 0.18 g
02 0.10 0.02 0.79 0.09 G
03 0.03 0 0 0.96 T
04 0.22 0.01 0.05 0.73 T
05 0.11 0 0.88 0.01 G
06 0.03 0.97 0 0 C
07 0 0 0.95 0.05 G
08 0 0 0 0.99 T
09 0.97 0 0.03 0 A
10 0.85 0.04 0.10 0.01 A
11 0.11 0.31 0.13 0.46 y
12 0.17 0.29 0.08 0.46 y
Binding TFs: UP00578A (No apical meristem (NAM) protein)
Binding Sites: TGACGTAA
TTACGCAA
TTACGTAA
AAGCAACC
ACACGCAA
ACGCAACC
ACGCAATC
ATAGCGTA
ATTGCGTA
CACGCAAC
CTACGCAA
CTACGCTA
CTACGTTA
CTTGCGTA
GTAACGTA
GTAGCGTA
GTTGCGTA
TAACGTAA
TAGCGTAA
TGGCGTAA
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

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