Transcription Factor
| Accessions: | UP00032A (UniPROBE 20160601) |
| Names: | GATA binding protein 3, Gata-3, GATA-binding factor 3, Gata3, Trans-acting T-cell-specific transcription factor GATA-3 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | GATA binding protein 3: Mus musculus GATA binding protein 3 (Gata3), mRNA. |
| Length: | 135 |
| Pfam Domains: | 22-55 GATA zinc finger 76-108 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 SPTGFGCKSRPKARSSTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLI 60 61 KPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGI 120 121 QTRNRKMSSKSKKCK |
| Interface Residues: | 31, 32, 34, 44, 48, 85, 86, 88, 98, 102, 103, 106, 123, 125, 126 |
| 3D-footprint Homologues: | 4hc9_A, 3vd6_C, 3dfx_B, 1gat_A, 4gat_A |
| Binding Motifs: | UP00032A_1 bkwdwakAGATAAGArwtdarg UP00032A_2 ytwtrywGATtktATCrrbwhm |
| Binding Sites: | AGATAACA AAAGATAA AAGATAAG ACTGATAA AGAGATAA AGATAACG AGATAAGA AGATAAGC AGATAAGG ATCTTATC CAGATAAG CGAGATAA CGATAAGA CTCTTATC CTGATAAG CTTATCTA CTTATCTC GAGATAAC GATAAGAA TCTTATCA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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