DNA Binding Motif
| Accessions: | UP00032A_2 (UniPROBE 20160601) |
| Names: | GATA binding protein 3, Gata-3, GATA-binding factor 3, Gata3, Trans-acting T-cell-specific transcription factor GATA-3 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | ytwtrywGATtktATCrrbwhm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.18 0.32 0.12 0.39 y 02 0.14 0.18 0.21 0.48 t 03 0.25 0.24 0.17 0.34 w 04 0.24 0.21 0.24 0.31 t 05 0.27 0.21 0.36 0.15 r 06 0.10 0.32 0.19 0.39 y 07 0.50 0.14 0.03 0.33 w 08 0.05 0.02 0.90 0.03 G 09 0.92 0.03 0.02 0.03 A 10 0.03 0.07 0.02 0.87 T 11 0.24 0.23 0.23 0.30 t 12 0.11 0.22 0.28 0.39 k 13 0.15 0.17 0.14 0.55 t 14 0.84 0.05 0.06 0.05 A 15 0.04 0.07 0.07 0.82 T 16 0.05 0.85 0.03 0.07 C 17 0.38 0.02 0.40 0.20 r 18 0.38 0.22 0.26 0.15 r 19 0.09 0.36 0.28 0.27 b 20 0.30 0.18 0.18 0.34 w 21 0.30 0.25 0.11 0.33 h 22 0.35 0.27 0.14 0.24 m |
| Binding TFs: | UP00032A (GATA zinc finger) |
| Binding Sites: | AGATAACA AAAGATAA AAGATAAG ACTGATAA AGAGATAA AGATAACG AGATAAGA AGATAAGC AGATAAGG ATCTTATC CAGATAAG CGAGATAA CGATAAGA CTCTTATC CTGATAAG CTTATCTA CTTATCTC GAGATAAC GATAAGAA TCTTATCA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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