DNA Binding Site
| Accessions: | CAGATGGC (UniPROBE 20160601), MA2163.1.10 (JASPAR 2024), MA2163.1.11 (JASPAR 2024), MA2163.1.2 (JASPAR 2024), MA2163.1.7 (JASPAR 2024) |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CAGATGGC |
| Type: | Heterodimer |
| Binding TFs: | UP00359A (Helix-loop-helix DNA-binding domain, Neuronal helix-loop-helix transcription factor ) UP00381A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) P46581 |
| Binding Motifs: | UP00359A_1 wkdraaaaraastm UP00381A_1 akwraTwagwaswm UP00359A_2 / UP00384A_2 mskaACAkCTGTyyaa UP00381A_2 / UP00384A_10 hmgamCAgcTGkymtc MA2163.1 CAGATGGT |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] Aquino-Nunez W, Mielko ZE, Dunn T, Santorella EM, Hosea C, Leitner L, McCalla D, Simms C, Verola WM, Vijaykumar S, Hudson ML. cnd-1/NeuroD1 Functions with the Homeobox Gene ceh-5/Vax2 and Hox Gene ceh-13/labial To Specify Aspects of RME and DD Neuron Fate in Caenorhabditis elegans. G3 (Bethesda) 10:3071-3085 (2020). [Pubmed] |
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