DNA Binding Site

Accessions: CGGATTAG (UniPROBE 20160601), UN0736.1.10 (JASPAR 2024), UN0736.1.7 (JASPAR 2024)
Organisms: Mus musculus, Homo sapiens, Caenorhabditis elegans
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: CGGATTAG
Type: Heterodimer
Binding TFs: UP00111A (Homeobox domain)
UP00112A (Homeobox domain)
UP00176A (Homeobox domain)
UP00267A (Homeobox domain)
UP00586A (Homeobox domain)
UP00586B (Homeobox domain)
UP00586C (Homeobox domain)
UP00586D (Homeobox domain)
UP00586E (Homeobox domain)
UP00586F (Homeobox domain)
UP00615C (Homeobox domain)
G5ED66
Binding Motifs: UP00111A_1 wdrwmmGGATTArkbww
UP00112A_1 aawmryTAATCCsytwv
UP00176A_1 ykwwGsGGATTArCck
UP00267A_1 kdwrgGGATTAAtydtc
UP00586A_1 wymawygCTAATCCsCttwwdr
UP00586B_1 wmaawyrcTAATCCscttwwwr
UP00586C_1 drdgykaGmTAATCCscytwgw
UP00586D_1 twwwawsGGATAATCCchtywmm
UP00586E_1 cwgwwtAytsGGATTArgwrwv
UP00586F_1 ratmwmAabCGGATTAgbtwwsa
UP00615C_2 gykwaaAcGGATTAaTmwtgmvw
UN0736.1 ckGATwAG
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.