DNA Binding Site
| Accessions: | CGGATTAG (UniPROBE 20160601), UN0736.1.10 (JASPAR 2024), UN0736.1.7 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CGGATTAG |
| Type: | Heterodimer |
| Binding TFs: | UP00111A (Homeobox domain) UP00112A (Homeobox domain) UP00176A (Homeobox domain) UP00267A (Homeobox domain) UP00586A (Homeobox domain) UP00586B (Homeobox domain) UP00586C (Homeobox domain) UP00586D (Homeobox domain) UP00586E (Homeobox domain) UP00586F (Homeobox domain) UP00615C (Homeobox domain) G5ED66 |
| Binding Motifs: | UP00111A_1 wdrwmmGGATTArkbww UP00112A_1 aawmryTAATCCsytwv UP00176A_1 ykwwGsGGATTArCck UP00267A_1 kdwrgGGATTAAtydtc UP00586A_1 wymawygCTAATCCsCttwwdr UP00586B_1 wmaawyrcTAATCCscttwwwr UP00586C_1 drdgykaGmTAATCCscytwgw UP00586D_1 twwwawsGGATAATCCchtywmm UP00586E_1 cwgwwtAytsGGATTArgwrwv UP00586F_1 ratmwmAabCGGATTAgbtwwsa UP00615C_2 gykwaaAcGGATTAaTmwtgmvw UN0736.1 ckGATwAG |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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